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About: HMMER     Goto   Sponge   NotDistinct   Permalink

An Entity of Type : yago:Software106566077, within Data Space : dbpedia.org associated with source document(s)

Type: Thingsoftwareschema:CreativeWorkworkwikidata:Q386724Softwareyago:Abstraction100002137yago:Code106355894yago:CodingSystem106353757yago:Communication100033020yago:Writing106359877yago:WrittenCommunication106349220yago:Software106566077 New Facet based on Instances of this Class

HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence alignments. It detects homology by comparing a profile-HMM (a Hidden Markov model constructed explicitly for a particular search) to either a single sequence or a database of sequences. Sequences that score significantly better to the profile-HMM compared to a null model are considered to be homologous to the sequences that were used to construct the profile-HMM. Profile-HMMs are constructed from a multiple sequence alignment in the HMMER package using the hmmbuild program. The profile-HMM implementation used in the HMMER software was based on the work of Krogh and colleagues. HMMER is a console u